Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8984915-SRR8984916/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  167,238,859
 Normal Paired: 158,799,342 (94.95%)
 Chimeric Paired: 6,370,382 (3.81%)
 Chimeric Ambiguous: 1,396,799 (0.84%)
 Unmapped: 672,336 (0.40%)
 Ligation Motif Present: 25,076 (0.01%)
Alignable (Normal+Chimeric Paired): 165,169,724 (98.76%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-10-01T07:44:15,042]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 48,128,151 (28.78%)
PCR Duplicates: 117,041,573 (69.98%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 49,959,690
Intra-fragment Reads: 21,607,117 (12.92% / 44.89%)
Below MAPQ Threshold: 10,093,706 (6.04% / 20.97%)
Hi-C Contacts: 16,427,328 (9.82% / 34.13%)
 Ligation Motif Present: 7,937  (0.00% / 0.02%)
 3' Bias (Long Range): 81% - 19%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,896,620  (1.73% / 6.02%)
Intra-chromosomal: 13,530,708  (8.09% / 28.11%)
Short Range (<20Kb): 7,442,741  (4.45% / 15.46%)
Long Range (>20Kb): 6,087,870  (3.64% / 12.65%)